PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.96XJX
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 2562aa    MW: 289309 Da    PI: 7.9279
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.96XJXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.7e-10556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ +v ++G g W+tI +          R+  ++k++w+++
      Aradu.96XJX  5 KQKWTSEEEAALKAGVVKHGVGKWRTILKDPEfsgvlYLRSNVDLKDKWRNL 56
                     79***********************************88***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.155158IPR017930Myb domain
SuperFamilySSF466891.54E-14271IPR009057Homeodomain-like
SMARTSM007171.7E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-12456IPR009057Homeodomain-like
PfamPF002492.6E-6556IPR001005SANT/Myb domain
CDDcd116601.27E-18656No hitNo description
SMARTSM005260.0086113189IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.56E-5119165IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.2E-5120153IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.40.50.3004.9E-4215971652IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525406.63E-2816011651IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF130863.0E-5916041979No hitNo description
Gene3DG3DSA:3.40.50.3004.9E-4217141766IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525406.63E-2817171788IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.9E-4218011802IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525406.63E-2818932008IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.9E-4219332008IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3009.9E-420872111IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525405.78E-2420872298IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF130871.4E-5120882272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008266Molecular Functionpoly(U) RNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2562 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV VKHGVGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNLSVMA  60
NGWSSREKSR LAIRRVHQAP KHDENPFAVA PFTPSDEDIV DVKPIQASRD VVPFSGPKRL  120
DNLIMEAITT LKETGGSNKT TIAAFIESHY YELEIENTVQ FSIFLLTLVI PLNIRDLLDR  180
WRGIQMEEEE DDGDIPDPSK RHLLHLRKEQ WFADAYNFLI CLPCESHFWC GFWDIMGPLL  240
ETFYNYFKDD RHDSPLRRLW KRISDEMKRC LQCVSQHHQA QDMYNMEYES SSIGPLLDVL  300
HKLDNERVTL HLRDINTKLA GEEYNPACDN AEVVNLLYEV LMFPVLLDYQ PLFNEFELFV  360
EAIDCKHELA LSGHQQFPGV YALLFCKRSV RSVGYRLAES MGKLRRGADL EPLQPLLKKF  420
IGCLEADALP LALDTSTPRA QLDRVSLWIG IKSLLSFLEP TTFEEGILEQ YPFFVDIVLN  480
HISGDSLEFS HAVNCLRLLF EMLGCKLWLR STLPPSSLEA LQDGEHEKQR RHFLYFLLHQ  540
VPVSSNFSIL TRKLANQIAL LVVYRGYRMN PPCPPFECSH MWGPALVSSL KDSSLHSSLR  600
QPAFDLIQII IVSDAAALVN SVLSCCTNPN TESSMENKVI IELDDESDDI CFQAIPNCAM  660
KDDDCSWAQF SAQARIIYQE FREWMCIPML WVDVLVDISP SVLPISFSQA IFWARSRFPM  720
IELEKSSETV LPVRSCLSSY AAEISSSFGW KVPTGSDDGG DGKKSKNSVE VLAMSSPLIR  780
TFNRLAAYFL VQMGQGVLQS QWTWQPLMSE SLILSLLDPN DDVRQFGKSV LEQVSNTRGL  840
SCGIKFLCSH ELSLYAIILG LKHAMRLVQL DSVMSKFHSL HHFWFILCKL LKESELSPQE  900
LPGEMDSDLM MPKFSSQGGF LKQPAFDSLP LEMDKHVSNV ELKTIYKFGG LISEMAWPIF  960
CKSLVKGKEF VDYNLCQMTC VRLLEVLPIV VDKHICLGKE HGNFRMHVQN KLDFKWLHDL  1020
MQWGRSSLKV VVVYWKRAVI QLLNLFKGFC DKTSVSTIMT IEHLISYDGC PWEELIKQVS  1080
HLSVSLSSGV SHKSRETNMT PKSMCKSLSF EKNPFTSDLH SSTMADKDLQ IFDSTMMSCK  1140
RGTKDVIILS DDEGEAKVSP NKSILSDNEI GNHVFHGNLM FCDAGKSLLT ADLVKQNVSS  1200
MEFCGKIMEP FQKNICTDSP ILSSEKQNSS NFSLHIKPAV TPFADSKGLD TQSREVSLKS  1260
KDRVNFTKFS DEAVNVKKLN KSCSSAVPKI GDTKSSKSSK MSSHSQDAED SQLEPAVKPV  1320
GRIQLHVPKP TSVVRRQVIQ LETPLDNNSV SLYKLKNPEN RFKPPRLDDW YKPILETNYF  1380
ATVGLSSTRK DETQTVGKLK EVPVYFQSPE QYVEIFRPLV LEEFKAQIQN TFHEMSSWED  1440
ASYGNLSVMS VERVDDFHFV RFVHDDSDSA ACKSFSENDL ILLSKDPPQK SSQEVHMVGK  1500
VERREKDNKR SLSIVLIRFY LQNGSSRLNL ARRNLTERSK WHACRIMSIT PQIREFHALS  1560
SVKAIPLLPL ILNPVSDSIC LGGTKEADLN KLCLSLQQTL RSSFNVCQLQ AISASIGRVE  1620
PKKNSELSLI QGPPGTGKTR TIVAIVSALL ASASTSLKMN CVKRAFNESL NKNSFSPFSR  1680
PKISQSVAIA RAWQDAALAR QMSEDVQSSL KSFRSSVRQR VLICAQSNAA VDELVSRISN  1740
HGLYGSNGKM YKPYLVRVGN AKTVHPNSLP FFIDTLVDQR VTEEKMHLNE GKKDMKVDLS  1800
VLRSNLEKLV DSIRFYESKR ADLRDGNSNV RSHLHDDSHV GDEKEMSDTE IKVTLRKLYE  1860
QKHQLYKDLS NVQAQEKKVN EETRSLRNKL RKSILMEAEI VVTTLSGCGG DLYGVCSETM  1920
LSSKFGGPSE LTLFDAIVID EAAQALEPAT LIPLQLLKSS GTKCIMVGDP KQLPATVLSN  1980
VASKYLYECS MFERLQRAGH PVIMLTEQLF LLISCKSFEE SKGSHVDGYE EGFENPLILM  2040
RSRVDVYEEG FENPLILMIN MVKCIYSSRR LAMVQISFPG SDERSCVYRM HPEICKFPSL  2100
HFYDNKLLNG SQMSRKSAPF HQTKCLGPYV FYDITDGREV RGKNMGAMSL CNEHEADAAV  2160
EVLRFFQKRF PTEFTGGRIG IITPYKSQLS LLRSRFLDTF GSSITAEIEF NTVDGFQGRE  2220
VDILLLSTVR AALLSNAASE RNSSTIGFVA DVRRMNVALT RAKLSLWIFG NARTLQTNHN  2280
WASLVKDAEE RDLIMTAKRP YHSIFKTASK DKDFLENSND VIRQPKHERE VKDNDKDGFE  2340
SKKKRVASEV KSKGRRDDKA LGKSALCKEK KSIDERNSIK NLTCLAAKCE SRSCSDGMLT  2400
TTEQRVFDNG EGKDKMKINR VETILGKRQS KFENTRSSAH HVVEETGSRQ KTSKLSELDR  2460
PNLCSRGDTS NSNEVSASSL EGCHKKEHAD QVKCTTKSGV SEISKRKQQR KAVDAILYSS  2520
LISTKKDETL TKASAKRRFS SSIANESVKP PKTTNGKHPS LC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gk7_A1e-2120882295412609Regulator of nonsense transcripts 1
2gk6_B1e-2120882295412609Regulator of nonsense transcripts 1
2gk6_A1e-2120882295412609Regulator of nonsense transcripts 1
2gjk_A1e-2120882295412609Regulator of nonsense transcripts 1
2xzp_A1e-2120882295411608REGULATOR OF NONSENSE TRANSCRIPTS 1
2xzo_A1e-2120882295411608REGULATOR OF NONSENSE TRANSCRIPTS 1
2wjy_A2e-2120882295588785REGULATOR OF NONSENSE TRANSCRIPTS 1
2wjv_B2e-2120882295588785REGULATOR OF NONSENSE TRANSCRIPTS 1
2wjv_A2e-2120882295588785REGULATOR OF NONSENSE TRANSCRIPTS 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086770.0KF208677.1 Arachis hypogaea putative MYB-related protein 23 (MYB23) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015933387.10.0PREDICTED: uncharacterized protein LOC107459682 isoform X1
TrEMBLA0A0R0FU350.0A0A0R0FU35_SOYBN; Uncharacterized protein
STRINGGLYMA15G00301.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-61telomere repeat binding factor 1